SMTL ID : 4oze.2 (1 other biounit)

A.aolicus LpxC in complex with native product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.74, H.226, D.230 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230, H2O.11 ZN.2: 3 residues within 4Å: Chain A: H.58, H.188 Ligands: CL.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.58, A:H.188, H2O.3 ZN.3: 5 residues within 4Å: Chain A: E.73, D.230, H.253 Ligands: ZN.1, 24G.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.73, A:H.253, H2O.11

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: N.57, H.58, H.188, V.192 Ligands: ZN.2 Ligand excluded by PLIP

1 x 24G: uridine-5'-diphosphate-3-O-(R-3-hydroxymyristoyl)-glucosamine(Non-covalent)

24G.5: 26 residues within 4Å: Chain A: I.18, H.19, T.56, H.58, S.59, E.73, R.137, Y.151, G.153, E.154, F.155, T.179, F.180, C.181, E.185, I.186, I.189, G.195, G.198, K.227, D.230, R.250, G.251, G.252, H.253 Ligands: ZN.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.186 Hydrogen bonds: A:H.58, A:H.58, A:R.137, A:R.137, A:Y.151, A:E.154, A:E.154, A:E.185, A:K.227, A:R.250, A:H.253 Water bridges: A:T.179, A:T.179, A:F.180, A:F.182 Salt bridges: A:H.19, A:R.137, A:K.227, A:K.227, A:K.227, A:H.253, A:H.253 pi-Cation interactions: A:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, M.D. et al., Mechanistic insight from the crystal structure of A.aolicus LpxC in the presence of product. To Be Published

Release Date

2014-08-13

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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