SMTL ID : 4p0x.1

Human farnesyl diphosphate synthase in complex with Taxodione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x 1WO: (5beta)-11-hydroxyabieta-7,9(11),13-triene-6,12-dione(Non-covalent)

1WO.1: 12 residues within 4Å: Chain A: G.51, K.52, Y.53, N.54, R.55, Q.91, L.95, R.108, F.234, D.238, K.252 Ligands: 1WO.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.52, A:N.54, A:L.95, A:R.108, A:F.234 Hydrogen bonds: A:K.52, A:Y.53, A:N.54, A:N.54, A:R.55, A:Q.91 Water bridges: A:R.55 1WO.2: 3 residues within 4Å: Chain A: N.54, K.342 Ligands: 1WO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.342, A:K.342 Hydrogen bonds: A:K.9, A:K.342 pi-Cation interactions: A:K.342 1WO.3: 12 residues within 4Å: Chain B: G.51, K.52, Y.53, N.54, R.55, Q.91, L.95, R.108, F.234, D.238, K.252 Ligands: 1WO.4 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.52, B:N.54, B:L.95, B:R.108, B:F.234 Hydrogen bonds: B:K.52, B:Y.53, B:N.54, B:N.54, B:R.55, B:Q.91 Water bridges: B:R.55 1WO.4: 3 residues within 4Å: Chain B: N.54, K.342 Ligands: 1WO.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:K.342, B:K.342 Hydrogen bonds: B:K.9, B:K.342 pi-Cation interactions: B:K.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.L. et al., Taxodione and arenarone inhibit farnesyl diphosphate synthase by binding to the isopentenyl diphosphate site. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-02

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthase

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