SMTL ID : 4p10.1

pro-carboxypeptidase U In Complex With 5-(3-aminopropyl)-1-propyl-6,7-dihydro-4H-benzimidazole-5-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 2B8: (5R)-5-(3-aminopropyl)-1-propyl-4,5,6,7-tetrahydro-1H-benzimidazole-5-carboxylic acid(Non-covalent)

2B8.1: 18 residues within 4Å: Chain A: W.32, Q.33, H.159, E.162, N.234, R.235, H.288, S.289, Y.290, S.299, L.340, A.343, G.346, D.348, T.361, E.363 Ligands: ZN.2, DMS.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.340, A:L.340, A:A.343, A:T.361 Hydrogen bonds: A:N.234, A:D.348 Water bridges: A:R.217, A:R.235, A:T.361 Salt bridges: A:H.159, A:R.217, A:R.235 pi-Cation interactions: A:R.217

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.159, E.162, H.288 Ligands: 2B8.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.159, A:E.162, A:E.162, A:H.288

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: Q.33, P.34, V.35, L.39, L.340, Y.341 Ligands: 2B8.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.35

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: Q.82, N.86, E.376 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brink, M. et al., Design and synthesis of conformationally restricted inhibitors of active thrombin activatable fibrinolysis inhibitor (TAFIa). Bioorg.Med.Chem. (2014)

Release Date

2014-08-13

Peptides

Carboxypeptidase B2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase B2