SMTL ID : 4p13.1

Medium chain acyl-CoA dehydrogenase, K304E mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: Y.124, C.125, V.126, T.127, G.132, S.133, W.157, I.158, T.159, N.205, T.213, I.362, I.365, Y.366, E.367, T.369, Q.371, I.372, L.375 Chain B: R.272, T.274, F.275, L.279, H.282, I.285, Q.340, I.341, G.343, G.344 Chain D: Q.283 29 PLIP interactions: 9 interactions with chain B, 19 interactions with chain A, 1 interactions with chain D Hydrogen bonds: B:T.274, B:Q.340, B:Q.340, B:G.344, A:Y.124, A:V.126, A:T.127, A:T.127, A:S.133, A:S.133, A:T.159, A:E.367, A:T.369, D:Q.283 Water bridges: B:Y.268, B:R.272, B:N.345, A:Y.124, A:Y.124, A:A.131, A:G.132, A:D.134, A:G.368 Salt bridges: B:R.272, B:R.272 Hydrophobic interactions: A:W.157, A:I.362, A:Y.366 pi-Stacking: A:Y.366 FAD.2: 29 residues within 4Å: Chain A: R.272, T.274, F.275, L.279, H.282, I.285, Q.340, I.341, G.343, G.344 Chain B: Y.124, V.126, T.127, G.132, S.133, W.157, I.158, T.159, N.205, T.213, I.362, I.365, Y.366, E.367, T.369, Q.371, I.372, L.375 Chain C: Q.283 30 PLIP interactions: 19 interactions with chain B, 10 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: B:W.157, B:T.213, B:I.362, B:Y.366 Hydrogen bonds: B:Y.124, B:V.126, B:T.127, B:T.127, B:S.133, B:S.133, B:T.159, B:T.159, B:E.367, B:T.369, B:T.369, A:Q.340, A:Q.340, A:G.344, C:Q.283 Water bridges: B:G.132, B:D.134, B:G.368, A:Y.268, A:R.272, A:R.272, A:N.345 pi-Stacking: B:Y.366, A:H.282 Salt bridges: A:R.272, A:R.272 FAD.3: 29 residues within 4Å: Chain B: Q.283 Chain C: Y.124, V.126, T.127, G.132, S.133, W.157, I.158, T.159, N.205, T.213, I.362, I.365, Y.366, E.367, T.369, Q.371, I.372, L.375 Chain D: R.272, T.274, F.275, L.279, H.282, I.285, Q.340, I.341, G.343, G.344 31 PLIP interactions: 10 interactions with chain D, 20 interactions with chain C, 1 interactions with chain B Hydrogen bonds: D:T.274, D:Q.340, D:Q.340, D:G.344, C:Y.124, C:V.126, C:T.127, C:T.127, C:S.133, C:S.133, C:T.159, C:T.159, C:E.367, C:T.369, C:T.369, B:Q.283 Water bridges: D:R.272, D:H.282, D:H.282, D:N.345, C:Y.124, C:Y.124, C:A.131, C:D.134, C:G.368 Salt bridges: D:R.272, D:R.272 Hydrophobic interactions: C:W.157, C:I.362, C:Y.366 pi-Stacking: C:Y.366 FAD.4: 30 residues within 4Å: Chain A: Q.283 Chain C: R.272, T.274, F.275, L.279, H.282, I.285, Q.340, I.341, G.343, G.344 Chain D: Y.124, C.125, V.126, T.127, G.132, S.133, W.157, I.158, T.159, N.205, T.213, I.362, I.365, Y.366, E.367, T.369, Q.371, I.372, L.375 29 PLIP interactions: 21 interactions with chain D, 7 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: D:W.157, D:T.213, D:I.362, D:Y.366 Hydrogen bonds: D:Y.124, D:V.126, D:T.127, D:T.127, D:S.133, D:S.133, D:T.159, D:T.159, D:E.367, D:T.369, D:T.369, C:Q.340, C:Q.340, C:G.344, A:Q.283 Water bridges: D:A.131, D:G.132, D:D.134, D:E.367, D:G.368, C:R.272, C:N.345 pi-Stacking: D:Y.366 Salt bridges: C:R.272, C:R.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battaile, K.P. et al., Medium chain acyl-CoA dehydrogenase, K304E mutant. To Be Published

Release Date

2015-03-18

Peptides

Medium-chain specific acyl-CoA dehydrogenase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Medium-chain specific acyl-CoA dehydrogenase, mitochondrial