SMTL ID : 4p1x.1

Crystal structure of staphylococcal LUK prepore

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain B: N.183, N.184, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.186, B:E.201 Hydrogen bonds: B:N.183 MPD.2: 9 residues within 4Å: Chain C: N.183, N.184, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.204 Hydrogen bonds: C:Y.189, C:R.207 MPD.3: 8 residues within 4Å: Chain E: N.183, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.207, E:R.207 MPD.4: 9 residues within 4Å: Chain G: N.183, N.184, W.186, Y.189, E.201, L.204, A.205, G.206, R.207 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:W.186 Hydrogen bonds: G:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, D. et al., Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun (2014)

Release Date

2014-10-01

Peptides

Gamma-hemolysin component C: ADFH
Gamma-hemolysin component B: BCEG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
D

F
F

H
H

B
A

C
C

E
E

G
G

Gamma-hemolysin component C

Gamma-hemolysin component B