SMTL ID : 4p2q.1 (3 other biounits)

Crystal structure of the 5cc7 TCR in complex with 5c2/I-Ek

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: V.119, N.121, D.169, H.170, W.171 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.171 Hydrogen bonds: A:N.121, A:W.171 NAG.2: 2 residues within 4Å: Chain B: N.23, Q.26 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.23, B:Q.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birnbaum, M.E. et al., Deconstructing the Peptide-MHC Specificity of T Cell Recognition. Cell (2014)

Release Date

2014-05-21

Peptides

H-2 class II histocompatibility antigen, E-K alpha chain: A
MHC class II E-beta-k: B
5c2 peptide: C
5cc7 T-cell receptor alpha chain: D
5cc7 T-cell receptor beta chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

H-2 class II histocompatibility antigen, E-K alpha chain

MHC class II E-beta-k

5c2 peptide

5cc7 T-cell receptor alpha chain

5cc7 T-cell receptor beta chain

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