- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 20 residues within 4Å:- Chain A: Y.12, R.15, V.17, P.36, N.37, G.38, A.39, G.40, K.41, T.42, T.43, Q.84, Q.162, H.194
- Chain B: S.136, S.138, G.139, G.140, E.141
- Ligands: NA.1
29 PLIP interactions:23 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:R.15, A:R.15, A:N.37, A:G.38, A:G.38, A:A.39, A:G.40, A:G.40, A:K.41, A:T.42, A:T.43, A:T.43, A:Q.84, B:S.138, B:S.138, B:G.139, B:G.140, B:E.141, B:E.141
- Water bridges: A:Y.12, A:T.42, A:T.42, A:Q.84, A:Q.162
- Salt bridges: A:K.41, A:K.41, A:H.194
- pi-Stacking: A:Y.12, A:Y.12
ATP.7: 20 residues within 4Å:- Chain A: S.136, S.138, G.139, G.140, E.141
- Chain B: Y.12, R.15, V.17, P.36, N.37, G.38, A.39, G.40, K.41, T.42, T.43, Q.84, Q.162, H.194
- Ligands: NA.6
26 PLIP interactions:19 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:R.15, B:R.15, B:N.37, B:G.38, B:G.38, B:A.39, B:G.40, B:G.40, B:K.41, B:T.42, B:T.42, B:T.43, B:Q.84, A:S.138, A:S.138, A:G.139, A:G.140, A:E.141, A:E.141
- Water bridges: B:Q.84, A:G.166
- Salt bridges: B:K.41, B:K.41, B:H.194
- pi-Stacking: B:Y.12, B:Y.12
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 1 residues within 4Å:- Chain A: R.91
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.91, A:R.91
GOL.4: 5 residues within 4Å:- Chain A: R.91, L.92, S.93, D.96, M.133
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.93
- Water bridges: A:S.93
GOL.5: 6 residues within 4Å:- Chain A: Y.81, P.83, S.87, E.146, R.149, A.150
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.146, A:R.149
GOL.8: 1 residues within 4Å:- Chain B: R.91
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.91, B:R.91
GOL.9: 5 residues within 4Å:- Chain B: R.91, L.92, S.93, D.96, M.133
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.93, B:D.96
- Water bridges: B:S.93
GOL.10: 6 residues within 4Å:- Chain B: Y.81, P.83, S.87, E.146, R.149, A.150
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.146, B:R.149
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sherman, D.J. et al., Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-03-26
- Peptides
- Lipopolysaccharide export system ATP-binding protein LptB: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sherman, D.J. et al., Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-03-26
- Peptides
- Lipopolysaccharide export system ATP-binding protein LptB: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A