SMTL ID : 4p35.1

Crystal structure of DJ-1 with Zinc(II) bound (crystal I)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.15, E.18, G.75, C.106, P.158 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.18, A:C.106, H2O.5, H2O.11 ZN.4: 5 residues within 4Å: Chain B: E.15, E.18, G.75, C.106, P.158 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.18, B:C.106, H2O.3, H2O.14

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.48, G.75, N.76 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: R.48, G.75, N.76 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: P.127, L.128, K.130, D.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.127, A:K.130, A:D.131 Water bridges: A:K.132 GOL.6: 4 residues within 4Å: Chain B: P.127, L.128, K.130, D.131 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.127, B:K.130, B:D.131 Water bridges: B:K.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tashiro, S. et al., Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein DJ-1. Biochemistry (2014)

Release Date

2014-04-09

Peptides

Protein DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein DJ-1

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