SMTL ID : 4p3d.1

MT1-MMP:Fab complex (Form II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: S.52, G.54, G.55, R.56 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain D: S.52, G.54, G.55, R.56 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.39, T.40, P.41, K.43, M.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.40, A:K.43 GOL.6: 5 residues within 4Å: Chain D: Q.39, T.40, P.41, K.43, M.93 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.43, D:K.43

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 6 residues within 4Å: Chain A: G.54, G.55, R.56, R.72, D.73, N.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.74, A:N.74 EPE.7: 7 residues within 4Å: Chain D: G.54, G.55, R.56, F.71, R.72, D.73, N.74 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.72, D:N.74, D:N.74

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain B: H.31, S.32, N.33 Chain C: F.1, N.11 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:S.32, B:N.33, C:N.11 Water bridges: C:D.2 EDO.8: 4 residues within 4Å: Chain D: K.148, G.149, L.179, T.181 3 PLIP interactions: 3 interactions with chain D Water bridges: D:L.179, D:L.179, D:T.181 EDO.10: 1 residues within 4Å: Chain F: D.2 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.2

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 1 residues within 4Å: Chain E: T.77 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Udi, Y. et al., Inhibition mechanism of membrane metalloprotease by an exosite-swiveling conformational antibody. Structure (2015)

Release Date

2014-12-17

Peptides

Heavy Chain Fab fragment of antibody LEM-2/15: AD
Light Chain Fab fragment of antibody LEM-2/15: BE
Matrix metalloproteinase-14: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
H

B
B

E
L

C
C

F
M

Heavy Chain Fab fragment of antibody LEM-2/15

Light Chain Fab fragment of antibody LEM-2/15

Matrix metalloproteinase-14

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