SMTL ID : 4p3f.1

Structure of the human SRP68-RBD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: F.161, E.162, Q.164, W.166 Ligands: PEG.2, EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.162 Water bridges: A:E.162 PEG.2: 6 residues within 4Å: Chain A: K.104, A.107, L.117, E.162 Ligands: PEG.1, EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.104 Water bridges: A:E.162 PEG.3: 1 residues within 4Å: Ligands: EDO.7 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: Y.208 Ligands: PEG.1 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Ligands: EDO.7 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Ligands: PEG.2, EDO.7 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Ligands: PEG.3, EDO.5, EDO.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grotwinkel, J.T. et al., SRP RNA remodeling by SRP68 explains its role in protein translocation. Science (2014)

Release Date

2014-04-16

Peptides

Signal recognition particle subunit SRP68: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Signal recognition particle subunit SRP68

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