SMTL ID : 4p42.1

Extended-Synaptotagmin 2, SMP - C2A - C2B Domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x EGC: 2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOX Y}-ETHOXY)-ETHANOL(Non-covalent)

EGC.1: 11 residues within 4Å: Chain A: F.24, M.112, I.131, F.133, Y.170, L.171, P.174, N.175, R.176, I.177 Ligands: PEE.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.24, A:F.133, A:L.171 Hydrogen bonds: A:R.176 EGC.3: 13 residues within 4Å: Chain B: I.21, F.24, I.25, M.112, I.131, F.133, Y.170, L.171, P.174, N.175, R.176, I.177 Ligands: PEE.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.21, B:F.24, B:I.25, B:F.133, B:L.171 Hydrogen bonds: B:R.176

2 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.2: 17 residues within 4Å: Chain A: F.29, I.33, V.37, A.40, L.44, V.54, L.59, F.84, I.90, L.92, I.106, W.143, I.166, I.167, Y.170, L.171 Ligands: EGC.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.29, A:I.33, A:I.33, A:V.37, A:A.40, A:L.44, A:L.59, A:F.84, A:I.90, A:L.92, A:I.106, A:W.143, A:I.166, A:I.167, A:I.167, A:Y.170, A:Y.170, A:Y.170, A:L.171 Water bridges: A:N.169 PEE.4: 19 residues within 4Å: Chain B: W.18, F.29, I.33, A.36, V.37, A.40, L.59, F.84, V.103, I.106, I.108, I.141, L.149, L.158, I.166, I.167, Y.170, L.171 Ligands: EGC.3 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:W.18, B:F.29, B:F.29, B:I.33, B:I.33, B:V.37, B:A.40, B:L.59, B:F.84, B:F.84, B:V.103, B:I.106, B:I.108, B:I.141, B:L.149, B:L.158, B:I.166, B:I.167, B:Y.170, B:Y.170, B:L.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schauder, C.M. et al., Structure of a lipid-bound extended synaptotagmin indicates a role in lipid transfer. Nature (2014)

Release Date

2014-05-14

Peptides

Extended synaptotagmin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Extended synaptotagmin-2