SMTL ID : 4p4g.1 (1 other biounit)

Crystal Structure of Mycobacterium tuberculosis Shikimate Dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.1: 13 residues within 4Å: Chain A: V.10, S.18, S.20, S.63, V.64, T.65, K.69, N.90, D.105, Y.215, L.240, Q.243, Q.247 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.240 Hydrogen bonds: A:S.20, A:S.20, A:T.65, A:K.69, A:K.69, A:N.90, A:N.90, A:D.105, A:Q.243, A:Q.247 Water bridges: A:Y.38

6 x BR: BROMIDE ION(Non-covalent)

BR.2: 5 residues within 4Å: Chain A: M.66, P.67, G.68, K.69, G.127 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: K.7, G.56, P.57, E.58 Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain A: R.149 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: G.176, L.178, A.179 Ligand excluded by PLIP BR.6: 1 residues within 4Å: Chain A: R.100 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain A: S.235, Q.238 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 7 residues within 4Å: Chain A: G.124, S.125, G.126, A.148, R.149, N.150, I.192 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.125, A:G.126, A:R.149, A:N.150 Water bridges: A:T.191 Salt bridges: A:R.149 SO4.9: 3 residues within 4Å: Chain A: D.152, K.153, R.156 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.152, A:D.152, A:R.156 Salt bridges: A:K.153, A:R.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lalgondar, M. et al., Crystal Structure of Mycobacterium tuberculosis Shikimate Dehydrogenase. To Be Published

Release Date

2015-03-18

Peptides

Shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase)

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