SMTL ID : 4p5n.1

Structure of CNAG_02591 from Cryptococcus neoformans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

homo-dimer

Ligands

7 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: T.21, H.65 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.21, A:H.65, H2O.1, H2O.1, H2O.2 CD.2: 3 residues within 4Å: Chain A: D.34, E.41, K.45 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.34, A:D.34, A:E.41 CD.8: 2 residues within 4Å: Chain B: N.49, P.50 No protein-ligand interaction detected (PLIP) CD.9: 2 residues within 4Å: Chain B: T.21, H.65 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.21, B:H.65, H2O.4, H2O.4, H2O.4, H2O.5 CD.10: 2 residues within 4Å: Chain B: D.34, E.41 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.34, B:D.34, B:E.41, H2O.6, H2O.6 CD.11: 2 residues within 4Å: Chain B: T.56, D.62 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.62, B:D.62, H2O.1, H2O.5 CD.12: 2 residues within 4Å: Chain B: T.18, D.74 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.18, B:D.74, B:D.74, H2O.5

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: H.65, N.66, T.69 Chain B: K.48 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.66 Water bridges: A:N.66 Salt bridges: A:H.65, B:K.48 SO4.4: 1 residues within 4Å: Chain A: R.24 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.24 SO4.5: 5 residues within 4Å: Chain A: T.37, T.38, K.39, E.40, P.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.39 Water bridges: A:T.37 SO4.6: 4 residues within 4Å: Chain A: N.49, K.52, N.66 Chain B: K.48 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.49, A:N.66 Salt bridges: A:K.52, B:K.48 SO4.13: 4 residues within 4Å: Chain A: K.48 Chain B: H.65, N.66, T.69 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.48, B:H.65 Hydrogen bonds: B:T.69 Water bridges: B:N.66 SO4.14: 3 residues within 4Å: Chain A: K.48 Chain B: N.49, K.52 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.48, B:K.52 Water bridges: B:N.66 SO4.15: 3 residues within 4Å: Chain B: N.14, V.15, I.35 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.14, B:V.15

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 1 residues within 4Å: Chain A: R.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.24, A:R.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McClelland, E.E. et al., A Small Protein Associated with Fungal Energy Metabolism Affects the Virulence of Cryptococcus neoformans in Mammals. Plos Pathog. (2016)

Release Date

2014-05-28

Peptides

Hypothetical protein CNAG_02591: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein CNAG_02591