- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)
- 10 x ZN: ZINC ION(Non-covalent)
ZN.2: 6 residues within 4Å:- Chain A: R.57, E.58, D.62, H.173
- Ligands: 5RP.1, ZN.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.58, A:H.173, H2O.2
ZN.3: 3 residues within 4Å:- Chain A: E.58
- Ligands: 5RP.1, ZN.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.58, H2O.2, H2O.3, H2O.3
ZN.7: 6 residues within 4Å:- Chain B: R.57, E.58, D.62, H.173
- Ligands: 5RP.6, ZN.8
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.58, B:H.173, H2O.7
ZN.8: 3 residues within 4Å:- Chain B: E.58
- Ligands: 5RP.6, ZN.7
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.58, H2O.3, H2O.7, H2O.11
ZN.9: 3 residues within 4Å:- Chain B: E.37
- Ligands: ZN.13, ZN.14
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.37, B:E.37
ZN.10: 1 residues within 4Å:- Chain B: D.233
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:D.233, B:D.233
ZN.11: 1 residues within 4Å:- Chain B: E.210
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.210, B:E.210, H2O.6, H2O.7
ZN.12: 3 residues within 4Å:- Chain B: E.81, F.211, H.215
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.81, B:H.215, H2O.7
ZN.13: 4 residues within 4Å:- Chain B: E.37, F.232
- Ligands: ZN.9, ZN.14
No protein-ligand interaction detected (PLIP)ZN.14: 3 residues within 4Å:- Chain B: E.37
- Ligands: ZN.9, ZN.13
No protein-ligand interaction detected (PLIP)- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: D.199
- Chain B: T.72, A.73, A.76
- Ligands: EDO.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.199
- Water bridges: B:R.80
EDO.5: 3 residues within 4Å:- Chain A: P.144, Q.145, Q.187
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.145, A:Q.187
EDO.15: 8 residues within 4Å:- Chain A: D.199, G.200, S.201
- Chain B: T.72, S.130, A.131, Q.132
- Ligands: EDO.4
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:D.199, B:S.130, B:Q.132
- Water bridges: B:S.130
EDO.16: 4 residues within 4Å:- Chain B: E.28, F.29, T.34, N.38
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.28, B:N.38
- Water bridges: B:N.38
EDO.17: 2 residues within 4Å:- Chain B: A.27, E.28
2 PLIP interactions:2 interactions with chain B- Water bridges: B:S.24, B:E.28
EDO.18: 4 residues within 4Å:- Chain B: A.99, P.148, E.149, R.153
No protein-ligand interaction detected (PLIP)EDO.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)EDO.20: 2 residues within 4Å:- Chain B: D.233, L.234
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Islam, Z. et al., Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-butanone-4-phosphate Synthase from Vibrio cholerae. J.Biol.Chem. (2015)
- Release Date
- 2015-03-25
- Peptides
- 3,4-dihydroxy-2-butanone 4-phosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)
- 10 x ZN: ZINC ION(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Islam, Z. et al., Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-butanone-4-phosphate Synthase from Vibrio cholerae. J.Biol.Chem. (2015)
- Release Date
- 2015-03-25
- Peptides
- 3,4-dihydroxy-2-butanone 4-phosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B