SMTL ID : 4p8o.1 (1 other biounit)

S. aureus gyrase bound to an aminobenzimidazole urea inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 883: 1-ethyl-3-[5-(5-fluoropyridin-3-yl)-7-(pyrimidin-2-yl)-1H-benzimidazol-2-yl]urea(Non-covalent)

883.1: 14 residues within 4Å: Chain A: I.30, N.33, S.34, E.37, V.58, D.60, R.63, G.64, I.65, P.66, I.81, R.100, T.129, I.131 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.30, A:V.58, A:P.66, A:I.81, A:I.131 Hydrogen bonds: A:D.60, A:D.60, A:R.100, A:R.100 Water bridges: A:N.33, A:G.64, A:T.129 pi-Cation interactions: A:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grillot, A.L. et al., Second-generation antibacterial benzimidazole ureas: discovery of a preclinical candidate with reduced metabolic liability. J.Med.Chem. (2014)

Release Date

2014-10-29

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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