SMTL ID : 4pa0.2 (1 other biounit)

Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 2OW: methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate(Non-covalent)

2OW.1: 12 residues within 4Å: Chain A: A.91, M.92, L.96, S.118, F.121, V.698, G.701, I.702, C.705, P.710, N.711, R.712 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.711 Hydrogen bonds: A:A.91, A:R.712, A:R.712 Water bridges: A:R.712 pi-Cation interactions: A:R.712

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.361, M.362, K.363, D.376, G.377, T.378, E.379, E.380 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.363, A:K.363, A:T.378, A:E.379, A:E.380 Water bridges: A:D.376, A:G.377, A:A.381 GOL.3: 7 residues within 4Å: Chain A: E.269, S.271, R.272, F.275, Q.276, L.277, E.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.271, A:R.272, A:R.272, A:R.272, A:L.277 GOL.4: 6 residues within 4Å: Chain A: T.265, Y.266, L.267, L.268, E.433, N.437 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.265, A:L.267, A:L.268, A:E.433, A:E.433, A:N.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winkelmann, D.A. et al., Structural basis for drug-induced allosteric changes to human beta-cardiac myosin motor activity. Nat Commun (2015)

Release Date

2015-07-08

Peptides

Myosin-7,Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Myosin-7,Green fluorescent protein

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