SMTL ID : 4paa.1 (1 other biounit)

Crystal structure of the mature form of rat DMGDH complexed with tetrahydrofolate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 39 residues within 4Å: Chain A: I.29, G.30, G.31, G.32, C.33, V.34, L.53, E.54, K.55, E.57, A.60, G.61, S.62, T.63, H.65, A.66, A.67, G.68, L.69, P.192, V.193, A.221, A.222, G.223, W.225, V.229, H.244, Y.246, Y.273, V.342, G.344, P.345, I.346, F.371, G.372, Y.373, G.374, I.375, I.376 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.246, A:I.346 Hydrogen bonds: A:G.31, A:V.34, A:K.55, A:S.56, A:A.60, A:G.61, A:S.62, A:S.62, A:T.63, A:T.63, A:A.67, A:G.68, A:L.69, A:L.69, A:V.193, A:V.193, A:G.374, A:I.375, A:I.376 Water bridges: A:G.31, A:G.32, A:G.32, A:S.62, A:T.63, A:G.223, A:G.223, A:F.224, A:F.224

1 x THG: (6S)-5,6,7,8-TETRAHYDROFOLATE(Non-covalent)

THG.2: 16 residues within 4Å: Chain A: F.511, I.541, E.554, L.555, T.556, I.568, F.630, L.631, I.648, Y.650, E.657, Y.659, F.698, Y.718, F.719, T.824 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.541, A:F.630, A:Y.650, A:F.719 Hydrogen bonds: A:E.554, A:T.556, A:T.556, A:T.556, A:Y.659, A:Y.718 Water bridges: A:I.541 Salt bridges: A:E.657 pi-Stacking: A:F.698

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luka, Z. et al., Folate in demethylation: The crystal structure of the rat dimethylglycine dehydrogenase complexed with tetrahydrofolate. Biochem.Biophys.Res.Commun. (2014)

Release Date

2014-06-18

Peptides

Dimethylglycine dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dimethylglycine dehydrogenase

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