SMTL ID : 4pct.1 (3 other biounits)

Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.46, V.47, Y.48, G.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.49 Salt bridges: A:K.46 SO4.2: 3 residues within 4Å: Chain A: V.61, P.62, A.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.61, A:A.63

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 8 residues within 4Å: Chain A: A.29, I.31, W.83, M.86, A.87, Y.134, F.317, F.325 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:F.317

1 x H76: (2S,3S,4R,5S)-2-ethynyl-5-methylpyrrolidine-3,4-diol(Non-covalent)

H76.4: 10 residues within 4Å: Chain A: H.32, E.53, W.54, H.101, Y.144, W.193, D.195, W.198, E.254, W.282 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.54, A:W.193, A:W.198, A:W.282 Hydrogen bonds: A:H.32, A:E.53, A:W.54, A:D.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hottin, A. et al., Exploiting the Hydrophobic Terrain in Fucosidases with Aryl-Substituted Pyrrolidine Iminosugars. Chembiochem (2015)

Release Date

2014-07-02

Peptides

Alpha-L-fucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-L-fucosidase

Related Entries With Identical Sequence