SMTL ID : 4pcv.1

The structure of BdcA (YjgI) from E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 8 residues within 4Å: Chain A: F.6, K.9, D.79, E.125, G.126, R.128, A.219, P.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.9 PGE.2: 5 residues within 4Å: Chain A: R.18, G.19, A.22, R.26, I.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.18, A:G.19, A:R.26 PGE.4: 5 residues within 4Å: Chain B: F.6, K.9, D.79, G.126, A.219 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.9 PGE.5: 7 residues within 4Å: Chain A: R.65 Chain B: A.63, D.64, R.65, D.99, D.102, K.106 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.65, B:R.65, B:D.102, B:K.106

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 6 residues within 4Å: Chain A: Q.156, R.160 Chain B: A.149, K.152, S.153, Q.156 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.156, A:R.160, B:K.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lord, D.M. et al., BdcA, a protein important for Escherichia coli biofilm dispersal, is a short-chain dehydrogenase/reductase that binds specifically to NADPH. Plos One (2014)

Release Date

2015-03-11

Peptides

BdcA (YjgI): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BdcA (YjgI)