SMTL ID : 4pdk.1

FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x 3VV: S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name)(Non-covalent)

3VV.1: 26 residues within 4Å: Chain A: L.101, L.102, A.103, A.104, R.105, T.106, I.108, D.185, F.205, L.208, Y.212, V.215, G.216, Y.219, F.220, R.253, Y.255, G.256, I.257, S.259, G.260, W.263 Chain B: Y.115, K.118, I.204, R.245 24 PLIP interactions: 20 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:L.101, A:L.101, A:A.104, A:I.108, A:I.108, A:F.205, A:L.208, A:Y.212, A:Y.212, A:V.215, A:V.215, A:Y.219, A:F.220, A:I.257, B:I.204 Hydrogen bonds: A:R.105, A:R.105, A:R.253, A:Y.255, A:S.259, B:Y.115 pi-Cation interactions: A:R.253 Salt bridges: B:K.118, B:R.245 3VV.2: 20 residues within 4Å: Chain A: N.130, S.134, Y.153, K.156, F.183, Y.184, M.187, R.191, F.194, H.195, I.200, L.203, I.204, G.207 Chain B: W.21, P.27, F.74, I.82, L.83 Ligands: 3VV.4 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.203, A:L.203, A:I.204, B:W.21, B:I.82, B:L.83 Hydrogen bonds: A:N.130, A:S.134, A:S.134, A:K.156, A:Y.184, A:R.191 Salt bridges: A:K.156, A:R.191, A:R.191, A:H.195 pi-Stacking: A:Y.153 3VV.3: 28 residues within 4Å: Chain A: I.111, R.114, Y.115, K.118, I.204, R.245 Chain B: L.101, L.102, A.103, A.104, R.105, T.106, I.108, D.185, F.205, L.208, L.211, Y.212, V.215, G.216, Y.219, F.220, R.253, G.256, I.257, S.259, G.260, W.263 20 PLIP interactions: 15 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.101, B:A.104, B:I.108, B:F.205, B:L.211, B:Y.212, B:Y.212, B:Y.212, B:V.215, B:Y.219, B:F.220, B:I.257, A:I.204 Hydrogen bonds: B:T.106, B:S.259, A:R.114, A:Y.115, A:R.245 Salt bridges: B:R.253, A:K.118 3VV.4: 18 residues within 4Å: Chain A: P.27, M.75 Chain B: R.126, N.130, S.134, Y.153, K.156, F.183, Y.184, M.187, R.191, F.194, H.195, Q.199, L.203, I.204, L.208 Ligands: 3VV.2 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.203, B:I.204, B:I.204, B:L.208, A:P.27 Hydrogen bonds: B:N.130, B:S.134, B:S.134, B:R.191 Salt bridges: B:R.126, B:K.156, B:R.191, B:R.191, B:H.195 pi-Stacking: B:Y.153, B:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, W. et al., The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand. Nat Commun (2015)

Release Date

2015-02-18

Peptides

Fatty acid metabolism regulator protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fatty acid metabolism regulator protein

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