SMTL ID : 4pf3.1

Mineralocorticoid receptor ligand-binding domain with compuond 37a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x HFN: 6-[1-(2,2-difluoro-3-hydroxypropyl)-5-(4-fluorophenyl)-3-methyl-1H-pyrazol-4-yl]-2H-1,4-benzoxazin-3(4H)-one(Non-covalent)

HFN.1: 23 residues within 4Å: Chain A: L.57, L.60, N.61, A.64, Q.67, W.97, M.98, L.101, S.102, L.105, R.108, F.120, M.136, L.139, C.140, M.143, L.229, F.232, C.233, T.236, V.245, F.247, L.251 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.64, A:W.97, A:L.105, A:F.120, A:L.229, A:L.251 Hydrogen bonds: A:N.61, A:N.61, A:T.236 Water bridges: A:R.108

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.42, A.43, R.62, L.63, K.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.43 EDO.3: 5 residues within 4Å: Chain A: S.240, H.241, K.244, V.245, E.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.241 Water bridges: A:E.246 EDO.4: 4 residues within 4Å: Chain A: P.29, N.189, Y.190, E.193 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.189, A:N.189 EDO.5: 6 residues within 4Å: Chain A: A.135, M.136, Y.137, E.138, L.139, F.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.138, A:L.139 EDO.6: 5 residues within 4Å: Chain A: N.35, I.36, K.73, W.74, V.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.74 EDO.7: 5 residues within 4Å: Chain A: Y.45, D.123, L.124, V.125, K.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.125 Water bridges: A:D.123 EDO.8: 5 residues within 4Å: Chain A: T.171, H.223, V.226, S.227, V.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.223 Water bridges: A:S.99 EDO.9: 5 residues within 4Å: Chain A: I.90, I.93, Q.94, M.250, I.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasui, T. et al., Discovery of 6-[5-(4-fluorophenyl)-3-methyl-pyrazol-4-yl]-benzoxazin-3-one derivatives as novel selective nonsteroidal mineralocorticoid receptor antagonists. Bioorg.Med.Chem. (2014)

Release Date

2014-11-26

Peptides

Mineralocorticoid receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mineralocorticoid receptor

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