SMTL ID : 4pf4.1

1.1A X-RAY STRUCTURE OF THE APO CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE 1, aa 1-277

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.237, K.250, R.254 Ligands: GOL.9 6 PLIP interactions: 6 interactions with chain A Water bridges: A:F.237, A:K.250, A:K.250, A:K.250 Salt bridges: A:K.250, A:R.254 SO4.2: 4 residues within 4Å: Chain A: F.179, P.182, K.223, L.227 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.223 SO4.3: 3 residues within 4Å: Chain A: G.23, Q.24 Ligands: GOL.8 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.24 Water bridges: A:S.22, A:F.25, A:K.142, A:K.142, A:K.142, A:K.142, A:D.162 SO4.4: 4 residues within 4Å: Chain A: H.1, E.60, R.64, H.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.60 Water bridges: A:R.64, A:R.64, A:R.64, A:K.168 Salt bridges: A:R.64

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: E.33, T.36, L.38, Y.40, H.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.36, A:T.36, A:H.81 NA.12: 5 residues within 4Å: Chain A: Q.73, H.74, P.75, T.79, K.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.73 Water bridges: A:K.159

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 11 residues within 4Å: Chain A: L.20, V.28, A.41, I.78, L.94, E.95, L.96, V.97, M.147, I.161 Ligands: MG.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.97, A:V.97, A:V.97 Water bridges: A:D.162 GOL.7: 8 residues within 4Å: Chain A: F.103, L.106, P.143, E.144, E.183, F.184, I.210, S.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.144 GOL.8: 9 residues within 4Å: Chain A: F.25, A.26, K.43, I.45, V.57, E.65, D.162, G.164 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.43, A:E.65, A:D.162 GOL.9: 5 residues within 4Å: Chain A: Y.235, E.236, F.237, R.254 Ligands: SO4.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.235, A:R.254, A:R.254 Water bridges: A:V.233, A:Y.235 GOL.10: 5 residues within 4Å: Chain A: V.27, K.29, F.44, T.88, D.89 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.29, A:K.29, A:T.88 GOL.11: 6 residues within 4Å: Chain A: R.6, Y.13, E.33, S.35, E.82, Y.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.6, A:R.6, A:S.35, A:S.35 Water bridges: A:E.82

1 x MG: MAGNESIUM ION(Non-covalent)

MG.13: 5 residues within 4Å: Chain A: V.28, K.43, I.161, D.162 Ligands: GOL.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Temmerman, K. et al., 1.1A X-RAY STRUCTURE OF THE APO CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE 1, aa 1-277. To Be Published

Release Date

2014-05-14

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1