SMTL ID : 4pfk.1

PHOSPHOFRUCTOKINASE. STRUCTURE AND CONTROL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 11 residues within 4Å: Chain A: T.125, I.126, D.127, M.169, G.170, R.171, E.222, H.249, R.252 Chain B: R.162, R.243 16 PLIP interactions: 3 interactions with chain B, 13 interactions with chain A Water bridges: B:R.162, A:G.11, A:I.126, A:R.252 Salt bridges: B:R.162, B:R.243, A:H.249, A:R.252 Hydrogen bonds: A:T.125, A:T.125, A:D.127, A:G.170, A:R.171, A:R.171, A:E.222, A:R.252 F6P.6: 11 residues within 4Å: Chain A: R.162, R.243 Chain B: T.125, I.126, D.127, M.169, G.170, R.171, E.222, H.249, R.252 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.125, B:T.125, B:D.127, B:G.170, B:R.171, B:R.171, B:E.222, B:R.252 Water bridges: B:G.11, B:I.126, B:R.252, A:R.162 Salt bridges: B:H.249, B:R.252, A:R.162, A:R.243 F6P.11: 11 residues within 4Å: Chain C: T.125, I.126, D.127, M.169, G.170, R.171, E.222, H.249, R.252 Chain D: R.162, R.243 15 PLIP interactions: 3 interactions with chain D, 12 interactions with chain C Water bridges: D:R.162, C:G.11, C:I.126, C:R.252 Salt bridges: D:R.162, D:R.243, C:H.249, C:R.252 Hydrogen bonds: C:T.125, C:D.127, C:G.170, C:R.171, C:R.171, C:E.222, C:R.252 F6P.16: 11 residues within 4Å: Chain C: R.162, R.243 Chain D: T.125, I.126, D.127, M.169, G.170, R.171, E.222, H.249, R.252 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:T.125, D:D.127, D:G.170, D:R.171, D:R.171, D:E.222, D:R.252 Water bridges: D:G.11, D:I.126, D:R.252, C:R.162 Salt bridges: D:H.249, D:R.252, C:R.162, C:R.243

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Ligands: ADP.4 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: R.154, G.185, E.187 Ligands: ADP.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.185, A:E.187, H2O.3, H2O.3 MG.7: 1 residues within 4Å: Ligands: ADP.9 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain B: R.154, G.185, E.187 Ligands: ADP.10 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.185, B:E.187, H2O.5, H2O.5 MG.12: 1 residues within 4Å: Ligands: ADP.14 No protein-ligand interaction detected (PLIP) MG.13: 4 residues within 4Å: Chain C: R.154, G.185, E.187 Ligands: ADP.15 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:G.185, C:E.187, H2O.8, H2O.8 MG.17: 1 residues within 4Å: Ligands: ADP.19 No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain D: R.154, G.185, E.187 Ligands: ADP.20 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:G.185, D:E.187, H2O.11, H2O.11

8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 17 residues within 4Å: Chain A: S.9, G.10, Y.41, R.72, C.73, P.74, F.76, K.77, Q.82, G.102, G.104, S.105, Q.107, G.108, K.111, R.171 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.9, A:C.73, A:C.73, A:Q.82, A:G.104, A:Q.107 Water bridges: A:R.171, A:R.171 Salt bridges: A:R.72, A:R.72, A:R.171 ADP.5: 14 residues within 4Å: Chain A: R.154, G.185, E.187, R.211, G.212, K.213, K.214, H.215 Chain D: R.21, R.25, G.55, G.58, D.59 Ligands: MG.3 16 PLIP interactions: 7 interactions with chain D, 9 interactions with chain A Hydrogen bonds: D:G.58, D:D.59, D:D.59, A:T.158, A:T.158, A:R.211, A:R.211, A:K.214 Water bridges: D:R.21, A:K.213 Salt bridges: D:R.21, D:R.25, D:R.25, A:R.154, A:R.211, A:K.213 ADP.9: 17 residues within 4Å: Chain B: S.9, G.10, Y.41, R.72, C.73, P.74, F.76, K.77, Q.82, G.102, G.104, S.105, Q.107, G.108, K.111, R.171 Ligands: MG.7 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.9, B:C.73, B:C.73, B:Q.82, B:G.104, B:Q.107 Water bridges: B:R.171, B:R.171 Salt bridges: B:R.72, B:R.72, B:R.171 ADP.10: 14 residues within 4Å: Chain B: R.154, G.185, E.187, R.211, G.212, K.213, K.214, H.215 Chain C: R.21, R.25, G.55, G.58, D.59 Ligands: MG.8 16 PLIP interactions: 9 interactions with chain B, 7 interactions with chain C Hydrogen bonds: B:T.158, B:T.158, B:R.211, B:R.211, B:K.214, C:G.58, C:D.59, C:D.59 Water bridges: B:K.213, C:R.21 Salt bridges: B:R.154, B:R.211, B:K.213, C:R.21, C:R.25, C:R.25 ADP.14: 17 residues within 4Å: Chain C: S.9, G.10, Y.41, R.72, C.73, P.74, F.76, K.77, Q.82, G.102, G.104, S.105, Q.107, G.108, K.111, R.171 Ligands: MG.12 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.9, C:C.73, C:C.73, C:Q.82, C:G.104, C:Q.107 Water bridges: C:R.171, C:R.171 Salt bridges: C:R.72, C:R.72, C:R.171 ADP.15: 14 residues within 4Å: Chain B: R.21, R.25, G.55, G.58, D.59 Chain C: R.154, G.185, E.187, R.211, G.212, K.213, K.214, H.215 Ligands: MG.13 15 PLIP interactions: 9 interactions with chain C, 6 interactions with chain B Hydrogen bonds: C:T.158, C:R.211, C:R.211, C:K.214, B:G.58, B:D.59 Water bridges: C:K.213, C:H.215, B:R.21 Salt bridges: C:R.154, C:R.211, C:K.213, B:R.21, B:R.25, B:R.25 ADP.19: 17 residues within 4Å: Chain D: S.9, G.10, Y.41, R.72, C.73, P.74, F.76, K.77, Q.82, G.102, G.104, S.105, Q.107, G.108, K.111, R.171 Ligands: MG.17 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.9, D:C.73, D:C.73, D:Q.82, D:G.104, D:Q.107 Water bridges: D:R.171, D:R.171 Salt bridges: D:R.72, D:R.72, D:R.171 ADP.20: 14 residues within 4Å: Chain A: R.21, R.25, G.55, G.58, D.59 Chain D: R.154, G.185, E.187, R.211, G.212, K.213, K.214, H.215 Ligands: MG.18 15 PLIP interactions: 9 interactions with chain D, 6 interactions with chain A Hydrogen bonds: D:T.158, D:R.211, D:R.211, D:K.214, A:G.58, A:D.59 Water bridges: D:K.213, D:H.215, A:R.21 Salt bridges: D:R.154, D:R.211, D:K.213, A:R.21, A:R.25, A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evans, P.R. et al., Phosphofructokinase: structure and control. Philos.Trans.R.Soc.London,Ser.B (1981)

Release Date

1989-01-09

Peptides

PHOSPHOFRUCTOKINASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

PHOSPHOFRUCTOKINASE

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