SMTL ID : 4pfo.1

Myosin VI motor domain in the Pi release state, space group P212121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.2, H2O.2

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 21 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201, L.309 Ligands: MG.1, GOL.5 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:E.158, A:N.199 Water bridges: A:E.158, A:N.159, A:N.201, A:N.201, A:N.201, A:S.203, A:S.203, A:D.307 Salt bridges: A:K.156

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: I.92, F.483, F.664, R.666, S.691, G.692, M.693, V.696 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.666, A:S.691 Water bridges: A:S.149 GOL.4: 3 residues within 4Å: Chain A: G.120, T.121 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.120 GOL.5: 4 residues within 4Å: Chain A: D.101, Y.106, F.162 Ligands: ADP.2 3 PLIP interactions: 3 interactions with chain A Water bridges: A:F.100, A:I.102, A:E.158 GOL.6: 10 residues within 4Å: Chain A: Q.480, F.483, N.484, I.487, L.488, S.691, G.692, M.693, V.696 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.480, A:F.483, A:S.691 Water bridges: A:S.695 GOL.7: 9 residues within 4Å: Chain A: A.252, G.253, A.254, S.255, Q.289, I.290, L.291, R.294, H.313 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.291, A:H.313 Water bridges: A:E.256 GOL.8: 8 residues within 4Å: Chain A: S.388, T.391, R.392, L.410, A.418, H.601, S.603, L.604 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.388, A:T.391, A:S.603 Water bridges: A:T.391 GOL.9: 5 residues within 4Å: Chain A: E.210, H.212, F.223, F.444, K.656 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.656 GOL.10: 3 residues within 4Å: Chain A: S.63, G.120 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.120 Water bridges: A:E.59, A:S.63, A:S.63 GOL.11: 6 residues within 4Å: Chain A: N.269, H.345, N.348, Q.369, A.370, Y.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.345, A:N.348 Water bridges: A:A.370 GOL.12: 6 residues within 4Å: Chain A: R.486, E.490, R.658, S.659, T.660, G.661 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.490, A:S.659 GOL.13: 8 residues within 4Å: Chain A: R.79, D.83, R.84, I.85, Y.86, I.105, P.123, P.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:R.84, A:I.85, A:Y.86 GOL.14: 6 residues within 4Å: Chain A: N.476, L.479, Q.480, F.483, R.666, S.691 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.476, A:R.666, A:R.666, A:S.691 Water bridges: A:A.457 GOL.15: 7 residues within 4Å: Chain A: N.283, K.284, D.287, Y.299, G.303, S.304, K.306 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.283, A:S.304, A:S.304, A:K.306, A:K.306 Water bridges: A:K.284, A:D.287, A:D.287, A:D.287, A:K.295 GOL.16: 6 residues within 4Å: Chain A: L.228, L.229, K.231, S.428, D.598, K.645 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.228, A:L.229, A:S.428, A:D.598, A:K.645 Water bridges: A:L.228, A:L.229, A:L.229, A:K.231, A:Q.649

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-VI

Related Entries With Identical Sequence