SMTL ID : 4pfp.1

Myosin VI motor domain in the Pi release state (with Pi) space group P21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.2, PO4.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.1 MG.8: 4 residues within 4Å: Chain B: T.157, S.203 Ligands: ADP.6, PO4.7 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.157, B:S.203, H2O.8, H2O.8

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 20 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201 Ligands: MG.1, PO4.4 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:T.157, A:E.158, A:N.199 Water bridges: A:T.157, A:N.159, A:N.201, A:N.201, A:S.203, A:S.203, A:S.203 Salt bridges: A:K.156 ADP.6: 20 residues within 4Å: Chain B: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201 Ligands: PO4.7, MG.8 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:N.97, B:Y.106, B:Y.106, B:G.153, B:A.154, B:G.155, B:K.156, B:T.157, B:E.158, B:N.199, B:N.201 Water bridges: B:T.157, B:E.158, B:E.158, B:N.159, B:N.201, B:N.201, B:S.203, B:S.203, B:D.307, B:D.307 Salt bridges: B:K.156

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.3: 7 residues within 4Å: Chain A: Q.480, N.484, L.488, S.691, G.692, M.693 Ligands: PO4.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.488 Hydrogen bonds: A:Q.480, A:S.691

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 8 residues within 4Å: Chain A: S.152, K.156, T.157, N.199, S.202, S.203 Ligands: MG.1, ADP.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.152, A:T.157, A:N.199, A:S.203 Water bridges: A:K.156, A:K.156, A:T.196, A:S.203, A:S.203 Salt bridges: A:K.156 PO4.5: 9 residues within 4Å: Chain A: I.92, S.149, F.483, I.487, F.664, R.666, S.691, M.693 Ligands: PGO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.149, A:S.149 Water bridges: A:S.149 Salt bridges: A:R.666 PO4.7: 9 residues within 4Å: Chain B: S.152, K.156, N.199, S.202, S.203, A.457, G.458 Ligands: ADP.6, MG.8 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.157, B:N.199, B:S.202, B:S.203, B:G.458 Water bridges: B:S.203, B:S.203, B:R.204, B:R.204 Salt bridges: B:K.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Unconventional myosin-VI

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