SMTL ID : 4pgt.1

CRYSTAL STRUCTURE OF HGSTP1-1[V104] COMPLEXED WITH THE GSH CONJUGATE OF (+)-ANTI-BPDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: F.143, D.147, Q.148, I.149, R.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.147, A:Q.148, A:I.149 Salt bridges: A:R.187 SO4.4: 2 residues within 4Å: Chain B: F.143, R.187 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.25 Salt bridges: B:R.187

2 x GBX: 2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID(Non-covalent)

GBX.2: 16 residues within 4Å: Chain A: Y.8, F.9, V.11, R.14, W.39, K.45, G.51, Q.52, L.53, P.54, Q.65, S.66, V.105, Y.109, G.206 Chain B: D.99 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.9, A:V.11, A:Y.109, A:Y.109 Hydrogen bonds: A:Q.52, A:L.53, A:L.53, A:Q.65, A:Q.65, A:Q.65, A:S.66 Water bridges: A:R.14, A:Q.65, A:N.67, A:E.98, A:E.98, B:D.99 Salt bridges: A:R.14, A:K.45 GBX.5: 16 residues within 4Å: Chain A: D.99 Chain B: Y.8, F.9, V.11, R.14, W.39, K.45, G.51, Q.52, L.53, P.54, Q.65, S.66, V.105, Y.109, G.206 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.9, B:V.11, B:Y.109, B:Y.109 Hydrogen bonds: B:R.14, B:Q.52, B:L.53, B:L.53, B:Q.65, B:Q.65, B:S.66 Water bridges: B:Q.65, B:N.67, A:D.99 Salt bridges: B:R.14, B:K.45

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 5 residues within 4Å: Chain A: A.23, W.29, E.31, F.193, E.198 4 PLIP interactions: 4 interactions with chain A Water bridges: A:W.29, A:E.31, A:F.193 Salt bridges: A:E.198 MES.6: 5 residues within 4Å: Chain B: A.23, W.29, E.31, F.193, E.198 3 PLIP interactions: 3 interactions with chain B Water bridges: B:F.193, B:F.193 Salt bridges: B:E.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ji, X. et al., Structure and function of residue 104 and water molecules in the xenobiotic substrate-binding site in human glutathione S-transferase P1-1. Biochemistry (1999)

Release Date

1999-09-01

Peptides

PROTEIN (GLUTATHIONE S-TRANSFERASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (GLUTATHIONE S-TRANSFERASE)

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