SMTL ID : 4pgz.2 (1 other biounit)

Structural basis of KIT activation by oncogenic mutations in the extracellular region reveals a zipper-like mechanism for ligand-dependent or oncogenic receptor tyrosine kinase activation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.16, T.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.16 NAG.5: 2 residues within 4Å: Chain B: N.16, T.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.18 Hydrogen bonds: B:N.16

3 x CO: COBALT (II) ION(Non-covalent)

CO.2: 1 residues within 4Å: Chain A: E.129 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.129, A:E.129 CO.3: 1 residues within 4Å: Chain A: E.56 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.56, H2O.1 CO.4: 2 residues within 4Å: Chain A: E.72, H.74 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reshetnyak, A.V. et al., The strength and cooperativity of KIT ectodomain contacts determine normal ligand-dependent stimulation or oncogenic activation in cancer. Mol.Cell (2015)

Release Date

2015-03-18

Peptides

Mast/stem cell growth factor receptor Kit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mast/stem cell growth factor receptor Kit

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