SMTL ID : 4ph4.1

The crystal structure of Human VPS34 in complex with PIK-III

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Q.424, V.426, T.490, K.491 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.491

1 x 2UG: 4'-(cyclopropylmethyl)-N~2~-(pyridin-4-yl)-4,5'-bipyrimidine-2,2'-diamine(Non-covalent)

2UG.2: 13 residues within 4Å: Chain A: F.350, P.356, I.372, K.374, Y.408, M.420, Q.421, F.422, I.423, S.425, L.488, I.498, D.499 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.350, A:P.356, A:F.422, A:L.488 Hydrogen bonds: A:K.374, A:K.374, A:I.423, A:I.423, A:D.499 Salt bridges: A:D.499 pi-Stacking: A:Y.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dowdle, W.E. et al., Selective VPS34 inhibitor blocks autophagy and uncovers a role for NCOA4 in ferritin degradation and iron homeostasis in vivo. Nat.Cell Biol. (2014)

Release Date

2014-10-29

Peptides

Phosphatidylinositol 3-kinase catalytic subunit type 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphatidylinositol 3-kinase catalytic subunit type 3

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