SMTL ID : 4phh.3 (3 other biounits)

Crystal structure of Ypt7 covalently modified with GNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x 2UK: 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-N-[3-(propanoylamino)propyl]guanosine(Covalent)

2UK.1: 23 residues within 4Å: Chain A: D.18, S.19, G.20, V.21, G.22, K.23, T.24, S.25, Y.35, S.36, C.37, Y.39, A.41, T.42, T.67, G.69, N.128, K.129, D.131, S.160, A.161, K.162 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:K.162 Hydrogen bonds: A:G.20, A:V.21, A:G.22, A:K.23, A:K.23, A:T.24, A:T.24, A:S.25, A:S.25, A:S.25, A:Y.35, A:C.37, A:Y.39, A:T.42, A:T.67, A:G.69, A:N.128, A:K.129, A:K.129, A:D.131, A:A.161, A:K.162, A:K.162 pi-Stacking: A:Y.35

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.24, T.42, D.66 Ligands: 2UK.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.24, A:T.42, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiegandt, D. et al., Locking GTPases covalently in their functional states. Nat Commun (2015)

Release Date

2014-05-28

Peptides

GTP-binding protein YPT7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

GTP-binding protein YPT7

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