SMTL ID : 4phl.2 (1 other biounit)

TbrPDEB1-inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.102, H.138, D.139, D.251 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.102, A:H.138, A:D.139, A:D.251, H2O.5

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.139 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.139, H2O.3, H2O.4, H2O.6, H2O.9

1 x PIL: 3-(CYCLOPENTYLOXY)-N-(3,5-DICHLOROPYRIDIN-4-YL)-4-METHOXYBENZAMIDE(Non-covalent)

PIL.3: 14 residues within 4Å: Chain A: H.98, T.212, M.214, D.251, I.252, N.254, W.265, A.266, V.269, F.273, M.290, G.302, Q.303, F.306 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.269, A:V.269 Hydrogen bonds: A:Q.303 Water bridges: A:Y.97, A:A.266 pi-Stacking: A:F.306

1 x EOH: ETHANOL(Non-functional Binders)

EOH.4: 8 residues within 4Å: Chain A: N.146, S.148, K.152, Q.276, E.280, E.286, L.288, F.291 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.152, A:E.280, A:L.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bland, N. et al., TbrPDEB1-inhibitor complex. To Be Published

Release Date

2015-05-20

Peptides

Class 1 phosphodiesterase PDEB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Class 1 phosphodiesterase PDEB1

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