SMTL ID : 4phr.1

Domain of unknown function 1792 (DUF1792) with manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 20 residues within 4Å: Chain A: R.33, Y.49, S.120, R.121, G.153, S.156, P.177, S.178, K.179, N.180, A.181, M.204, L.205, G.206, K.210, G.227, H.228, H.250 Ligands: MN.2, ACT.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.49 Hydrogen bonds: A:S.120, A:P.177, A:A.181, A:G.206, A:G.206, A:H.228 Water bridges: A:E.38, A:R.121, A:T.155, A:T.155, A:S.156, A:S.178, A:K.210, A:G.227, A:G.227 Salt bridges: A:R.33, A:R.33, A:R.121, A:K.210, A:H.228, A:H.228

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: R.121 Ligands: UDP.1, ACT.3 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: W.94, F.118, R.121, E.253 Ligands: UDP.1, MN.2, ACT.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.118, A:R.121 Water bridges: A:D.36, A:R.121 Salt bridges: A:R.121 ACT.4: 5 residues within 4Å: Chain A: F.93, W.94, D.125, K.243 Ligands: ACT.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.36 Water bridges: A:D.125 Salt bridges: A:K.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold. Nat Commun (2014)

Release Date

2014-08-06

Peptides

Putative glycosyltransferase (GalT1): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative glycosyltransferase (GalT1)

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