SMTL ID : 4pjj.1

MYOSIN VI (MD-INSERT2-CAM, DELTA-INSERT1) post-rigor state - long soaking with PO4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:T.157, A:E.158, A:N.199 Water bridges: A:K.156, A:T.157, A:N.201, A:N.201, A:S.203, A:S.203, A:S.203, A:D.429 Salt bridges: A:K.156

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.1, H2O.2

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: S.152, T.196, R.198, S.202, R.204 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.152, A:T.196, A:S.202, A:S.202, A:S.202 Water bridges: A:R.233, A:E.241 Salt bridges: A:R.198, A:R.204 PO4.4: 5 residues within 4Å: Chain A: E.210, H.212, F.223, F.418, K.630 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.212, A:K.630

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: L.462, V.479, H.480, Y.481 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.481, A:D.483 GOL.6: 8 residues within 4Å: Chain A: S.203, R.204, F.205, Y.227, L.228, E.230, A.431, I.446 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.203, A:G.206, A:Y.227, A:E.230 Water bridges: A:A.431

2 x CA: CALCIUM ION(Non-covalent)

CA.7: 5 residues within 4Å: Chain B: D.94, D.96, N.98, F.100, E.105 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, B:D.96, B:E.105, B:E.105, H2O.14 CA.8: 5 residues within 4Å: Chain B: D.130, D.132, D.134, Q.136, E.141 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.130, B:Q.136, B:E.141, B:E.141, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: A
Calmodulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Unconventional myosin-VI

Calmodulin

Related Entries With Identical Sequence