SMTL ID : 4pjl.1

Myosin VI motor domain A458E mutant in the Pi release state, space group P212121 -

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.157, S.203, E.457 Ligands: ADP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.1, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 20 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201, L.309 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:E.158, A:N.199 Water bridges: A:S.152, A:T.157, A:E.158, A:E.158, A:N.159, A:N.201, A:N.201, A:S.203, A:S.203, A:S.203, A:S.203, A:D.307, A:E.457 Salt bridges: A:K.156

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: I.92, F.483, F.664, R.666, S.691, G.692, M.693, V.696 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.665, A:R.666, A:S.691, A:G.692 Water bridges: A:I.665 GOL.4: 5 residues within 4Å: Chain A: G.458, N.476, Q.480, F.483, R.666 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.149, A:N.476 Water bridges: A:G.150, A:G.150, A:F.459, A:Q.480, A:Q.480 GOL.5: 5 residues within 4Å: Chain A: N.283, T.286, L.309, D.311, R.318 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.283, A:L.309, A:R.318 Water bridges: A:N.283 GOL.6: 5 residues within 4Å: Chain A: D.287, K.288, I.290, Q.292, K.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.288, A:Q.292, A:K.295 GOL.7: 9 residues within 4Å: Chain A: A.252, G.253, A.254, S.255, Q.289, I.290, L.291, R.294, H.313 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.291, A:H.313 Water bridges: A:E.256 GOL.8: 7 residues within 4Å: Chain A: P.186, E.189, N.201, H.245, R.249, L.309, L.310 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.186, A:E.189, A:N.201, A:N.201, A:R.249, A:R.249 GOL.9: 6 residues within 4Å: Chain A: N.283, K.284, D.287, G.303, S.304, K.306 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.287, A:S.304 Water bridges: A:K.284, A:Y.299 GOL.10: 8 residues within 4Å: Chain A: S.388, T.391, R.392, L.410, A.418, H.601, S.603, L.604 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.388, A:S.603 Water bridges: A:T.391 GOL.11: 4 residues within 4Å: Chain A: D.60, S.63, G.120, G.760 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.63 Water bridges: A:E.59, A:D.60, A:G.120 GOL.12: 6 residues within 4Å: Chain A: L.142, R.486, R.658, S.659, T.660, G.661 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.486, A:E.490, A:S.659 GOL.13: 4 residues within 4Å: Chain A: E.210, H.212, F.223, K.656 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.212, A:K.656, A:K.656 GOL.14: 4 residues within 4Å: Chain A: H.345, N.348, Q.369, A.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.345, A:N.348, A:Q.369 Water bridges: A:S.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-VI