SMTL ID : 4pjn.1

Myosin VI motor domain in the Pi release state, space group P212121 - shortly soaked with PO4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: N.476, L.479, Q.480, F.483, R.666, S.691 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.476, A:Q.480, A:R.666, A:R.666, A:S.691 GOL.5: 8 residues within 4Å: Chain A: A.252, G.253, A.254, Q.289, I.290, L.291, R.294, H.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.291, A:H.313 GOL.6: 6 residues within 4Å: Chain A: S.265, N.269, H.345, N.348, A.370, Y.373 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.265, A:S.265, A:H.345, A:N.348 Water bridges: A:A.370 GOL.7: 8 residues within 4Å: Chain A: I.92, F.483, F.664, R.666, S.691, M.693, V.696 Ligands: GOL.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.149, A:I.665, A:R.666, A:S.691 Water bridges: A:S.149 GOL.8: 8 residues within 4Å: Chain A: Q.480, F.483, N.484, L.488, S.691, G.692, M.693 Ligands: GOL.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.483, A:S.691 Water bridges: A:Q.480, A:Q.480, A:S.695 GOL.9: 5 residues within 4Å: Chain A: D.287, K.288, I.290, Q.292, K.295 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.292, A:K.295, A:K.295 Water bridges: A:Q.292 GOL.10: 5 residues within 4Å: Chain A: D.101, Y.106, F.162, R.165 Ligands: ADP.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.165, A:R.165 Water bridges: A:I.102 GOL.11: 7 residues within 4Å: Chain A: N.283, K.284, D.287, Y.299, G.303, S.304, K.306 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.283, A:S.304, A:S.304, A:K.306 Water bridges: A:Y.299, A:G.303, A:S.304 GOL.12: 4 residues within 4Å: Chain A: E.210, H.212, F.223, K.656 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.212, A:K.656

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: S.152, T.196, R.198, S.202, R.204, E.460 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.152, A:T.196, A:T.196, A:T.196, A:S.202, A:E.460 Water bridges: A:R.198, A:R.198, A:R.204, A:R.204, A:R.204, A:R.204 Salt bridges: A:R.204

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.3, H2O.4

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 21 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201, L.309 Ligands: MG.3, GOL.10 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:E.158, A:N.199 Water bridges: A:E.158, A:E.158, A:N.159, A:N.201, A:N.201, A:S.203, A:S.203, A:D.307 Salt bridges: A:K.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-VI

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