SMTL ID : 4pk4.1

Myosin VI motor domain in the PPS state - from a Pi release state crystal, space group P212121 after long soaking with PO4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201, L.309 Ligands: MG.2, PO4.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:T.157, A:E.158, A:N.199 Water bridges: A:T.157, A:E.158, A:N.201, A:N.201, A:S.203 Salt bridges: A:K.156

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.1, PO4.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.1

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 11 residues within 4Å: Chain A: S.152, K.156, T.157, N.199, S.202, S.203, R.204, A.457, G.458 Ligands: ADP.1, MG.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.157, A:N.199, A:S.203, A:R.204, A:G.458 Water bridges: A:S.203 Salt bridges: A:K.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Llinas, P. et al., How actin initiates the motor activity of Myosin. Dev.Cell (2015)

Release Date

2015-04-29

Peptides

Unconventional myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unconventional myosin-VI

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