SMTL ID : 4pkz.1

Crystal structure of P1M mutant of Macrophage Migration Inhibitory Factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.16, G.17, F.18, L.19, S.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.16, A:G.17, A:L.19, A:S.20 SO4.4: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.68, B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.5: 2 residues within 4Å: Chain B: P.15, D.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.16

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.70 Hydrogen bonds: A:G.68, A:A.70, A:Q.71, A:Q.71 IPA.3: 6 residues within 4Å: Chain A: Y.95, N.97 Chain B: M.2, H.62, I.64, V.106 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.64, B:V.106, B:V.106, A:Y.95 Hydrogen bonds: A:N.97, A:N.97 IPA.6: 3 residues within 4Å: Chain B: G.65, K.66, Q.71 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.66 Hydrogen bonds: B:K.66, B:Q.71, B:Q.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pantouris, G. et al., An Analysis of MIF Structural Features that Control Functional Activation of CD74. Chem.Biol. (2015)

Release Date

2015-09-30

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor