SMTL ID : 4pl1.1 (1 other biounit)

X-ray crystal structure of C118A RlmN from Escherichia coli with S-adenosylmethionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: F.115, C.116, M.159, M.160, G.161, G.163, E.164, P.165, S.195, T.196, S.217, H.219, E.262, P.294, W.295, N.296, F.298, C.339 Ligands: SF4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.163, A:E.164, A:S.195, A:S.195, A:S.217, A:H.219, A:N.296, A:N.296 pi-Stacking: A:F.115

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 7 residues within 4Å: Chain A: C.109, L.111, C.113, C.116, G.163, S.197 Ligands: SAM.1 4 PLIP interactions: 4 interactions with chain A, Salt bridges: A:E.164 Metal complexes: A:C.109, A:C.113, A:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silakov, A. et al., Characterization of a cross-linked protein-nucleic acid substrate radical in the reaction catalyzed by RlmN. J.Am.Chem.Soc. (2014)

Release Date

2014-05-28

Peptides

Dual-specificity RNA methyltransferase RlmN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dual-specificity RNA methyltransferase RlmN

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