SMTL ID : 4pmo.1 (1 other biounit)

Crystal structure of the Mycobacterium tuberculosis Tat-secreted protein Rv2525c, monoclinic crystal form I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: D.37, Y.59, C.93, Q.95, S.136, Y.169, W.188, Q.207, D.221 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.94, A:S.136, A:Q.207, A:D.221, A:D.221 Water bridges: A:D.37, A:Y.59, A:D.138, A:D.138 GOL.2: 5 residues within 4Å: Chain A: Q.28, P.201, K.227 Ligands: NA.11, NA.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.28, A:P.201, A:K.227 Water bridges: A:A.203 GOL.3: 2 residues within 4Å: Chain A: L.121, A.124 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.75

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 2 residues within 4Å: Chain A: R.63, Y.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.96 FMT.5: 4 residues within 4Å: Chain A: G.29, G.30, L.32 Ligands: NA.10 No protein-ligand interaction detected (PLIP) FMT.6: 6 residues within 4Å: Chain A: Y.26, F.27, Q.28, G.29, G.30, S.31 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.28, A:Q.28, A:G.29, A:G.30 FMT.7: 2 residues within 4Å: Chain A: Y.198, P.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.198 FMT.8: 1 residues within 4Å: Chain A: R.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.81, A:R.81 FMT.9: 4 residues within 4Å: Chain A: R.64, K.73, Q.95, K.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:K.73, A:K.98

3 x NA: SODIUM ION(Non-functional Binders)

NA.10: 4 residues within 4Å: Chain A: G.29, G.30, L.32 Ligands: FMT.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.29 NA.11: 3 residues within 4Å: Chain A: Q.28 Ligands: GOL.2, NA.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.28 NA.12: 3 residues within 4Å: Chain A: Q.28 Ligands: GOL.2, NA.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bellinzoni, M. et al., Structural studies suggest a peptidoglycan hydrolase function for the Mycobacterium tuberculosis Tat-secreted protein Rv2525c. J.Struct.Biol. (2014)

Release Date

2014-10-08

Peptides

Tat-secreted protein Rv2525c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tat-secreted protein Rv2525c

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