SMTL ID : 4poo.1

The crystal structure of Bacillus subtilis YtqB in complex with SAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 21 residues within 4Å: Chain A: A.33, T.34, M.35, G.36, N.37, G.38, H.39, D.40, D.58, I.59, Q.60, S.85, H.86, N.107, L.108, G.109, Y.110, L.111, T.119, T.120, S.124 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:N.107 Hydrogen bonds: A:T.34, A:G.36, A:N.37, A:N.37, A:G.38, A:H.39, A:D.40, A:D.40, A:I.59, A:Q.60, A:S.85, A:H.86, A:S.124 Water bridges: A:N.107 Salt bridges: A:H.39 pi-Stacking: A:H.86 SAM.2: 16 residues within 4Å: Chain B: A.33, T.34, M.35, G.36, N.37, G.38, H.39, D.40, D.58, I.59, Q.60, K.84, S.85, H.86, N.107, S.124 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.34, B:G.36, B:N.37, B:G.38, B:H.39, B:D.40, B:I.59, B:S.85, B:H.86, B:S.124 Water bridges: B:T.34 Salt bridges: B:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.C. et al., Structural analysis of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis. Biochem.Biophys.Res.Commun. (2014)

Release Date

2014-04-02

Peptides

Putative RNA methylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative RNA methylase

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