- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x CA: CALCIUM ION(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: V.96, H.128, M.212, Q.213
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.128, A:Q.213
EDO.3: 7 residues within 4Å:- Chain A: R.197, Y.199, V.221, L.222, L.223, D.224
- Chain E: S.217
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.199, A:Y.199
EDO.6: 1 residues within 4Å:- Chain B: V.7
No protein-ligand interaction detected (PLIP)EDO.7: 4 residues within 4Å:- Chain B: V.96, H.128, M.212, Q.213
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.128, B:Q.213
- Water bridges: B:V.211
EDO.12: 4 residues within 4Å:- Chain D: V.96, H.128, M.212, Q.213
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.128, D:Q.213
EDO.15: 4 residues within 4Å:- Chain E: V.96, H.128, M.212, Q.213
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:H.128, E:Q.213
- 5 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.4: 4 residues within 4Å:- Chain A: H.128, F.130, Y.199, S.201
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.130
IPA.8: 5 residues within 4Å:- Chain B: H.128, M.129, F.130, Y.199, S.201
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.130, B:F.130, B:Y.199
IPA.10: 4 residues within 4Å:- Chain C: H.128, F.130, G.200, S.201
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.130
- Hydrogen bonds: C:H.128
IPA.13: 5 residues within 4Å:- Chain D: H.128, F.130, Y.199, G.200, S.201
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.130
IPA.16: 5 residues within 4Å:- Chain E: H.128, F.130, Y.199, S.201, R.262
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:H.128, E:F.130, E:F.130
- Hydrogen bonds: E:S.201
- Water bridges: E:R.262
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khan, Z.M. et al., Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate. J.Virol. (2014)
- Release Date
- 2014-04-09
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x CA: CALCIUM ION(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khan, Z.M. et al., Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate. J.Virol. (2014)
- Release Date
- 2014-04-09
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
J