SMTL ID : 4pp6.1

Crystal Structure of the Estrogen Receptor alpha Ligand-binding Domain in Complex with Resveratrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x LYS- ILE- LEU- HIS- ARG- LEU- LEU- GLN- ASP: Nuclear receptor coactivator 2(Non-covalent)

LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP.1: 11 residues within 4Å: Chain A: I.54, K.58, L.68, Q.71, V.72, L.75, E.76, D.234, L.235, E.238, M.239 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.54, A:L.68, A:Q.71, A:E.76, A:D.234 Hydrogen bonds: A:K.58, A:E.76, A:E.238 Water bridges: A:E.238 LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP.2: 12 residues within 4Å: Chain B: I.54, K.58, L.68, H.69, Q.71, V.72, L.75, E.76, D.234, L.235, E.238, M.239 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.54, B:L.68, B:V.72, B:L.75, B:E.76, B:D.234 Hydrogen bonds: B:E.76, B:E.238

2 x STL: RESVERATROL(Non-covalent)

STL.3: 14 residues within 4Å: Chain A: M.39, L.42, T.43, A.46, E.49, L.83, L.87, R.90, F.100, M.117, I.120, G.217, H.220, L.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.46, A:L.87, A:L.221 Hydrogen bonds: A:E.49, A:R.90, A:R.90, A:H.220, A:L.221 Water bridges: A:L.87 pi-Stacking: A:F.100 STL.4: 11 residues within 4Å: Chain B: M.39, L.42, L.45, A.46, E.49, L.83, M.84, L.87, H.220, L.221, M.224 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.46, B:L.221 Hydrogen bonds: B:E.49, B:L.83, B:H.220, B:H.220 pi-Stacking: B:F.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network. Elife (2014)

Release Date

2014-05-07

Peptides

Estrogen receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estrogen receptor

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