SMTL ID : 4ppi.1

Crystal structure of Bcl-xL hexamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.132, N.135, D.136 Chain D: E.84, Q.85, N.88 6 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: A:A.131, A:N.135, B:H.137, D:Q.85, D:N.88 Water bridges: A:D.136 GOL.2: 6 residues within 4Å: Chain B: T.132, N.135, D.136 Chain F: E.84, Q.85, N.88 6 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B, 2 interactions with chain F Hydrogen bonds: C:H.137, B:A.131, B:N.135, F:Q.85, F:N.88 Water bridges: B:D.136 GOL.3: 6 residues within 4Å: Chain C: T.132, N.135, D.136 Chain E: E.84, Q.85, N.88 6 PLIP interactions: 2 interactions with chain E, 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: E:Q.85, E:N.88, A:H.137, C:A.131, C:N.135 Water bridges: C:D.136 GOL.4: 6 residues within 4Å: Chain A: E.84, Q.85, N.88 Chain D: T.132, N.135, D.136 6 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A, 1 interactions with chain E Hydrogen bonds: D:A.131, D:N.135, A:Q.85, A:N.88, E:H.137 Water bridges: D:D.136 GOL.5: 6 residues within 4Å: Chain C: E.84, Q.85, N.88 Chain E: T.132, N.135, D.136 6 PLIP interactions: 1 interactions with chain F, 2 interactions with chain C, 3 interactions with chain E Hydrogen bonds: F:H.137, C:Q.85, C:N.88, E:A.131, E:N.135 Water bridges: E:D.136 GOL.6: 6 residues within 4Å: Chain B: E.84, Q.85, N.88 Chain F: T.132, N.135, D.136 6 PLIP interactions: 2 interactions with chain B, 3 interactions with chain F, 1 interactions with chain D Hydrogen bonds: B:Q.85, B:N.88, F:A.131, F:N.135, D:H.137 Water bridges: F:D.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajan, S. et al., Structural transition in Bcl-xL and its potential association with mitochondrial calcium ion transport. Sci Rep (2015)

Release Date

2015-03-04

Peptides

Bcl-2-like protein 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Bcl-2-like protein 1

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