SMTL ID : 4ppr.1

Crystal structure of Mycobacterium tuberculosis D,D-peptidase Rv3330 in complex with meropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MER: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid(Covalent)

MER.1: 14 residues within 4Å: Chain A: A.86, S.87, T.119, S.142, N.144, G.183, L.184, K.248, T.249, G.250, Y.251, T.252, Q.257, R.279 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.119, A:L.184, A:T.252 Hydrogen bonds: A:S.87, A:T.119, A:S.142, A:S.142, A:N.144, A:T.249, A:Y.251, A:Q.257, A:R.279 Salt bridges: A:K.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prigozhin, D.M. et al., Subfamily-specific adaptations in the structures of two penicillin-binding proteins from Mycobacterium tuberculosis. Plos One (2014)

Release Date

2014-11-05

Peptides

Penicillin-binding protein DacB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein DacB1