SMTL ID : 4pql.1

N-Terminal domain of DNA binding protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-tetramer

Ligands

30 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: N.33 Chain B: N.33 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: E.13, R.14, F.15, Q.17 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: Y.16, Q.17, A.40, R.43, D.44 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: E.123, N.127 Chain D: K.51 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: K.29 Chain B: N.75 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: K.69 Chain B: D.128 Ligands: EDO.7 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: S.66, K.69 Ligands: EDO.6 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: R.117, K.121 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: F.23 Chain B: Y.16, I.73 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain B: E.13, R.14, F.15, Q.17 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: F.15, Y.16, Q.17, A.40, R.43, D.44 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain B: E.9 Chain C: E.13 Chain D: R.43, K.111 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain B: D.34, I.37, I.41, L.74, C.76, I.84 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain B: N.67, K.78, T.82, K.85, Q.96, R.98, N.105 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain B: N.67, E.68 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain C: N.33 Chain D: N.33 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain C: E.13, R.14, F.15, Q.17 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain C: Y.16, Q.17, A.40, R.43, D.44 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain B: K.51 Chain C: E.123, N.127 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain C: K.29 Chain D: N.75 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain C: K.69 Chain D: D.128 Ligands: EDO.22 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain C: S.66, K.69 Ligands: EDO.21 Ligand excluded by PLIP EDO.23: 2 residues within 4Å: Chain C: R.117, K.121 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain C: F.23 Chain D: Y.16, I.73 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain D: E.13, R.14, F.15, Q.17 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain D: F.15, Y.16, Q.17, A.40, R.43, D.44 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain A: E.13 Chain B: R.43, K.111 Chain D: E.9 Ligand excluded by PLIP EDO.28: 6 residues within 4Å: Chain D: D.34, I.37, I.41, L.74, C.76, I.84 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain D: N.67, K.78, T.82, K.85, Q.96, R.98, N.105 Ligand excluded by PLIP EDO.30: 2 residues within 4Å: Chain D: N.67, E.68 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Mechanism of staphylococcal multiresistance plasmid replication origin assembly by the RepA protein. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-06-11

Peptides

Truncated replication protein RepA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Truncated replication protein RepA