SMTL ID : 4pr6.1

A Second Look at the HDV Ribozyme Structure and Dynamics.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

16 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: C.72 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: G.69, G.70 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: C.52, A.53 Chain B: K.85, T.86 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: C.21, C.22, G.38 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain A: C.4, G.5 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: G.17, C.18 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain A: C.19, U.20 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain A: G.10, G.11 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain A: G.35, C.36 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain A: U.23, C.24 No protein-ligand interaction detected (PLIP) MG.11: 5 residues within 4Å: Chain A: G.6, C.7, A.8, G.31, C.32 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain A: C.7, A.8 No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain A: C.15, A.16 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain B: K.20, K.24 No protein-ligand interaction detected (PLIP) MG.15: 5 residues within 4Å: Chain B: S.45, L.46, K.47, M.48, R.49 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.45, B:S.45 MG.16: 3 residues within 4Å: Chain B: D.21, K.24, K.25 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.21, B:D.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kapral, G.J. et al., New tools provide a second look at HDV ribozyme structure, dynamics and cleavage. Nucleic Acids Res. (2014)

Release Date

2014-10-29

Peptides

U1 small nuclear ribonucleoprotein A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

U1 small nuclear ribonucleoprotein A