SMTL ID : 4pr9.1 (2 other biounits)

Human Vinculin (residues 891-1066) in complex with PIP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.1: 6 residues within 4Å: Chain A: S.24, K.25, K.171 Chain B: K.25, K.34, K.171 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:K.25, A:S.24 Salt bridges: B:K.34, B:K.171, A:K.25, A:K.25, A:K.34, A:K.171 Hydrophobic interactions: A:K.25 Water bridges: A:S.24 PIO.2: 2 residues within 4Å: Chain B: K.54, R.55 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.54, B:R.55 Salt bridges: B:K.54

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain B: K.25 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.25 Water bridges: B:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chinthalapudi, K. et al., Mechanism and function of lipid-directed oligomerization of vinculin. To be Published

Release Date

2014-12-10

Peptides

Vinculin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vinculin

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