SMTL ID : 4prw.1

Xylanase T6 (XT6) from Geobacillus Stearothermophilus in complex with xylohexaose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-XYP-XYP-XYP.1: 21 residues within 4Å: Chain A: E.58, N.59, K.62, H.95, W.99, Q.102, N.158, Q.159, Y.203, N.204, Q.234, H.236, Q.238, W.241, E.265, W.273, W.316, W.324, R.328 Ligands: ZN.8, CL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.238 Water bridges: A:Q.238

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.297, A.374, D.377, K.379 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.297, A:A.374, A:D.377, A:K.379, H2O.4 ZN.3: 1 residues within 4Å: Chain A: D.21 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.21, H2O.2, H2O.5, H2O.11, H2O.12, H2O.18 ZN.4: 3 residues within 4Å: Chain A: H.11, D.365 Ligands: CL.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.11, A:D.365 ZN.6: 1 residues within 4Å: Chain A: D.282 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.282, A:D.282, H2O.7, H2O.18, H2O.18 ZN.8: 5 residues within 4Å: Chain A: E.35, E.58, H.322 Ligands: XYP-XYP-XYP-XYP-XYP-XYP.1, CL.9 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.58, A:E.58, A:H.322, H2O.18 ZN.10: 3 residues within 4Å: Chain A: E.27, S.307, I.310 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.27, A:S.307, A:I.310, H2O.2, H2O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: D.377, H.378, K.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.378 Salt bridges: A:H.378, A:K.379

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: H.11, D.365 Ligands: ZN.4 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: E.58, H.322, W.324 Ligands: XYP-XYP-XYP-XYP-XYP-XYP.1, ZN.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dann, R.D. et al., Xylanase T6 (XT6) from Geobacillus Stearothermophilus in complex with xylohexaose. To be Published

Release Date

2015-03-11

Peptides

Endo-1,4-beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase