SMTL ID : 4pud.1

Extracellulr Xylanase from Geobacillus stearothermophilus: E159Q mutant, with xylopentaose in active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-XYP-XYP.1: 20 residues within 4Å: Chain A: E.50, N.51, K.54, H.87, W.91, N.150, Q.151, Y.195, N.196, Q.226, H.228, Q.230, W.233, E.257, W.265, W.308, W.316, R.320 Ligands: CL.4, ZN.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.50, A:N.51, A:K.54, A:W.308

9 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: D.13 Ligands: ZN.11 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.13, H2O.10, H2O.10, H2O.11, H2O.12 ZN.3: 3 residues within 4Å: Chain A: H.3, D.357 Ligands: ZN.13 No protein-ligand interaction detected (PLIP) ZN.6: 5 residues within 4Å: Chain A: E.27, E.50, H.314 Ligands: XYP-XYP-XYP-XYP-XYP.1, CL.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.50, A:E.50, A:H.314, H2O.14 ZN.7: 5 residues within 4Å: Chain A: D.289, A.366, D.369, K.371 Ligands: CL.10 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.289, A:A.366, A:D.369, A:K.371, H2O.2 ZN.8: 4 residues within 4Å: Chain A: E.19, S.299, I.302, S.303 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.19, A:S.299, A:I.302, H2O.2, H2O.4, H2O.5 ZN.9: 2 residues within 4Å: Chain A: D.274 Ligands: CL.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.274, A:D.274, H2O.10, H2O.14 ZN.11: 5 residues within 4Å: Chain A: D.13, L.40, K.41, F.44 Ligands: ZN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.13, A:K.41, A:F.44, H2O.10, H2O.10 ZN.12: 3 residues within 4Å: Chain A: Y.273, D.274 Ligands: CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.274 ZN.13: 3 residues within 4Å: Chain A: H.3, D.357 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.3, A:D.357

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: E.50, H.314, W.316 Ligands: XYP-XYP-XYP-XYP-XYP.1, ZN.6 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: D.274 Ligands: ZN.9, ZN.12 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: D.289, K.293, A.366, K.371 Ligands: ZN.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dann, R.D. et al., Extracellulr Xylanase from Geobacillus stearothermophilus: E159Q mutant, with xylopentaose in active site. To be Published

Release Date

2015-03-18

Peptides

Endo-1,4-beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase

Related Entries With Identical Sequence