SMTL ID : 4pv7.1

Cocrystal structure of dipeptidyl-peptidase 4 with an indole scaffold inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

homo-dimer

Ligands

2 x CJP: 1-[2-(2,4-dichlorophenyl)-1-(methylsulfonyl)-1H-indol-3-yl]methanamine(Non-covalent)

CJP.1: 11 residues within 4Å: Chain A: R.111, E.191, E.192, Y.533, S.616, Y.617, V.642, Y.648, Y.652, N.696, H.726 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.192, A:Y.533, A:S.616 pi-Stacking: A:Y.652 pi-Cation interactions: A:R.111 CJP.2: 11 residues within 4Å: Chain B: R.111, E.191, E.192, Y.533, S.616, Y.617, V.642, Y.648, Y.652, N.696, H.726 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.192, B:S.616 pi-Stacking: B:Y.652 pi-Cation interactions: B:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, P. et al., Discovery of dipeptidyl peptidase IV (DPP4) inhibitors based on a novel indole scaffold. Chin.Chem.Lett. (2014)

Release Date

2015-03-18

Peptides

Dipeptidyl peptidase 4 soluble form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4 soluble form