SMTL ID : 4pvp.1

Crystal structure of malonate-bound human L-asparaginase protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 9 residues within 4Å: Chain A: T.170, T.188, G.190, R.198, G.200, D.201, S.202, G.222, G.224 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.170, A:T.170, A:T.188, A:D.201, A:G.224 Water bridges: A:R.198, A:G.200, A:G.222 Salt bridges: A:R.198, A:R.198

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: L.57, E.58, D.60, F.63, A.65, C.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:F.63, A:A.65 NA.3: 6 residues within 4Å: Chain B: L.57, E.58, D.60, F.63, A.65, C.67 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.63, B:A.65, B:A.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nomme, J. et al., Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry (2012)

Release Date

2014-03-26

Peptides

Isoaspartyl peptidase/L-asparaginase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoaspartyl peptidase/L-asparaginase

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